Transcript: LINC01672:12

Basic information

LNCipedia transcript ID: LINC01672:12 
LNCipedia gene ID: LINC01672
Location (hg38): chr1:6724636-6730012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT000677; FPKM1_group_49_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.0217 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01672:12 no no no no

Available literature

  1. Li (2018), Novel long noncoding RNA NMR promotes tumor progression via NSUN2 and BPTF in esophageal squamous cell carcinoma., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAMTA1-1:5
4.0 lnc-CAMTA1-1:5
4.1 lnc-CAMTA1-1:5
5.0 lnc-CAMTA1-1:5
5.1 LINC01672:2
5.2 LINC01672:12