Transcript: LINC01646:11

Basic information

LNCipedia transcript ID: LINC01646:11 
HGNC Gene Symbol: LINC01646    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1646
Ensembl Gene ID: ENSG00000232596
Ensembl Transcript ID: ENST00000420522
Location (hg38): chr1:4571548-4583421
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000145; ENST00000420522; ENST00000420522.1; RP1-37J18.2-001; OTTHUMT00000001545.1; NONHSAT000588
Alternative gene names: XLOC_000035; linc-AJAP1-1; ENSG00000232596; RP1-37J18.2; ENSG00000232596.1; OTTHUMG00000000647.1; ENSG00000232596.2; LINC01646


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.4331 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01646:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AJAP1-1:3
3.1 lnc-AJAP1-1:3
4.0 lnc-AJAP1-1:3
4.1 lnc-AJAP1-1:3
5.0 lnc-AJAP1-1:3
5.1 LINC01646:6
5.2 LINC01646:11