Transcript: LINC01646:10

Basic information

LNCipedia transcript ID: LINC01646:10 
LNCipedia gene ID: LINC01646
Location (hg38): chr1:4571529-4593647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 820 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000827; NONHSAT000587
Alternative gene names: XLOC_000035; linc-AJAP1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.1586 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01646:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AJAP1-1:2
3.1 lnc-AJAP1-1:2
4.0 lnc-AJAP1-1:2
4.1 lnc-AJAP1-1:2
5.0 lnc-AJAP1-1:2
5.1 LINC01646:5
5.2 LINC01646:10