Transcript: LINC01643:3

Basic information

LNCipedia transcript ID: LINC01643:3 
HGNC Gene Symbol: LINC01643    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1643
Ensembl Gene ID: ENSG00000236052
Ensembl Transcript ID: ENST00000412218
Location (hg38): chr22:34017473-34188425
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 757 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412218; ENST00000412218.1; LL22NC03-86D4.1-001; OTTHUMT00000320580.3; NONHSAT085022
Alternative gene names: ENSG00000236052; LL22NC03-86D4.1; ENSG00000236052.1; OTTHUMG00000150928.3; LINC01643


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.3456 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01643:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ISX-3:1
3.1 lnc-ISX-3:1
4.0 lnc-ISX-3:1
4.1 lnc-ISX-3:1
5.0 lnc-ISX-3:1
5.1 LINC01643:2
5.2 LINC01643:3