Transcript: LINC01639:4

Basic information

LNCipedia transcript ID: LINC01639:4 
HGNC Gene Symbol: LINC01639    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1639
Ensembl Gene ID: ENSG00000236117
Ensembl Transcript ID: ENST00000450750
Location (hg38): chr22:43400331-43409681
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 951 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450750; ENST00000450750.1; RP4-754E20__A.5-001; OTTHUMT00000318937.1
Alternative gene names: ENSG00000236117; RP4-754E20__A.5; ENSG00000236117.1; OTTHUMG00000150565.1; LINC01639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.0595 non-coding 
CPAT coding probability 7.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01639:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPPED1-1:1
3.1 lnc-MPPED1-1:1
4.0 lnc-MPPED1-1:1
4.1 lnc-MPPED1-1:1
5.0 lnc-MPPED1-1:1
5.1 LINC01639:2
5.2 LINC01639:4