Transcript: LINC01629:2

Basic information

LNCipedia transcript ID: LINC01629:2 
HGNC Gene Symbol: LINC01629    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1629
Ensembl Gene ID: ENSG00000258602
Ensembl Transcript ID: ENST00000553613
RefSeq ID: NR_133913
Location (hg38): chr14:76959638-76965802
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000553613; ENST00000553613.1; RP11-7F17.7-001; OTTHUMT00000414297.1; NONHSAT037937; NR_133913.1
Alternative gene names: ENSG00000258602; RP11-7F17.7; ENSG00000258602.1; OTTHUMG00000171577.1; linc-KIAA1737-2; LINC01629


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.8125 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01629:2 no no no no

Available literature

  1. Lin (2015), The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury., Am. J. Physiol. Renal Physiol.
  2. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf166B-3:1
3.1 lnc-C14orf166B-3:1
4.0 LINC01629:2
4.1 LINC01629:2
5.0 LINC01629:2
5.1 LINC01629:2
5.2 LINC01629:2