Transcript: LINC01626:3

Basic information

LNCipedia transcript ID: LINC01626:3 
LNCipedia gene ID: LINC01626
Location (hg38): chr6:71450834-71458874
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011324; ENST00000431997; ENST00000431997.1; RP1-288M22.2-001; OTTHUMT00000041164.1; NONHSAT113514
Alternative gene names: XLOC_005343; linc-RIMS1-2; ENSG00000223765; RP1-288M22.2; ENSG00000223765.1; OTTHUMG00000015005.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.4073 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01626:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OGFRL1-2:1
3.1 lnc-OGFRL1-2:1
4.0 LINC01626:3
4.1 LINC01626:3
5.0 LINC01626:3
5.1 LINC01626:3
5.2 LINC01626:3