Transcript: LINC01622:24

Basic information

LNCipedia transcript ID: LINC01622:24 
HGNC Gene Symbol: LINC01622    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1622
RefSeq ID: NR_027115
Location (hg38): chr6:961003-1101332
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2339 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027115.3
Alternative gene names: LINC01622


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.9213 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01622:24 no no no no

Available literature

  1. Bánfai (2012), Long noncoding RNAs are rarely translated in two human cell lines., Genome Res.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01622:24
5.1 LINC01622:24
5.2 LINC01622:24