Transcript: LINC01622:18

Basic information

LNCipedia transcript ID: LINC01622:18 
LNCipedia gene ID: LINC01622
Ensembl Gene ID: ENSG00000278343
Ensembl Transcript ID: ENST00000612554
Location (hg38): chr6:958324-962272
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011429; ENST00000434292; ENST00000434292.1; RP5-1077H22.1-001; OTTHUMT00000039629.1; NONHSAT147375; ENST00000612554.1
Alternative gene names: XLOC_005571; linc-HUS1B-7; ENSG00000229796; RP5-1077H22.1; ENSG00000229796.1; OTTHUMG00000014118.1; ENSG00000278343.1; TCONS_00011202; AL356130.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.9213 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01622:18 no no no no

Available literature

  1. Bánfai (2012), Long noncoding RNAs are rarely translated in two human cell lines., Genome Res.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXOC2-6:7
3.1 lnc-EXOC2-5:7
4.0 LINC01622:18
4.1 LINC01622:18
5.0 LINC01622:18
5.1 LINC01622:18
5.2 LINC01622:18