Transcript: LINC01618:1

Basic information

LNCipedia transcript ID: LINC01618:1 
HGNC Gene Symbol: LINC01618    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1618
Ensembl Gene ID: ENSG00000250302
Ensembl Transcript ID: ENST00000514957
RefSeq ID: NR_040106
Location (hg38): chr4:52789994-52815464
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 727 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007529; ENST00000514957; ENST00000514957.1; RP11-752D24.3-001; OTTHUMT00000361827.2; NONHSAT096384; NR_040106; NR_040106.1
Alternative gene names: XLOC_003538; linc-RASL11B; ENSG00000250302; RP11-752D24.3; ENSG00000250302.1; OTTHUMG00000160696.2; LINC01618; LOC152578


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.0353 non-coding 
CPAT coding probability 11.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01618:1 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASL11B-1:1
3.1 lnc-RASL11B-1:1
4.0 LINC01618:1
4.1 LINC01618:1
5.0 LINC01618:1
5.1 LINC01618:1
5.2 LINC01618:1