Transcript: LINC01611:7

Basic information

LNCipedia transcript ID: LINC01611:7 
LNCipedia gene ID: LINC01611
Location (hg38): chr6:84421028-84626814
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1020 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000089122.1|MICT00000307482.1
Alternative gene names: RP1-90L14.1; TCONS_l2_00025430


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 41.8574 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01611:7 no no no no

Available literature

  1. Awata (2014), A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01611:7
5.0 LINC01611:7
5.1 LINC01611:7
5.2 LINC01611:7