Transcript: LINC01605:9

Basic information

LNCipedia transcript ID: LINC01605:9 
LNCipedia gene ID: LINC01605
Location (hg38): chr8:37412742-37493902
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1025 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014975; NONHSAT126038
Alternative gene names: XLOC_007053; linc-DUSP26-5; TCONS_00014973


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.051 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01605:9 no no no no

Available literature

  1. Forrest (2018), Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-150O12.6.1-2:1
3.1 lnc-RP11-150O12.6.1-1:6
4.0 LINC01605:9
4.1 LINC01605:9
5.0 LINC01605:9
5.1 LINC01605:9
5.2 LINC01605:9