Transcript: LINC01605:3

Basic information

LNCipedia transcript ID: LINC01605:3 
LNCipedia gene ID: LINC01605
Location (hg38): chr8:37516505-37529111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00014976
Alternative gene names: XLOC_007054; linc-DUSP26-6; TCONS_00014973


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.0091 non-coding 
CPAT coding probability 7.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01605:3 no no no no

Available literature

  1. Forrest (2018), Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-150O12.6.1-1:1
3.1 lnc-RP11-150O12.6.1-1:3
4.0 LINC01605:3
4.1 LINC01605:3
5.0 LINC01605:3
5.1 LINC01605:3
5.2 LINC01605:3