Transcript: LINC01593:1

Basic information

LNCipedia transcript ID: LINC01593:1 
HGNC Gene Symbol: LINC01593    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1593
Ensembl Gene ID: ENSG00000231221
Ensembl Transcript ID: ENST00000424355
RefSeq ID: NR_135071
Location (hg38): chr2:108049200-108052755
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00003364; ENST00000424355; ENST00000424355.1; AC023672.2-001; OTTHUMT00000330878.1; NONHSAT073085; NR_135071.1
Alternative gene names: XLOC_002255; linc-ST6GAL2-5; ENSG00000231221; AC023672.2; ENSG00000231221.1; OTTHUMG00000153366.1; LINC01593; TCONS_00003364


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.3858 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01593:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EDAR-4:1
3.1 lnc-EDAR-8:1
4.0 LINC01593:1
4.1 LINC01593:1
5.0 LINC01593:1
5.1 LINC01593:1
5.2 LINC01593:1