Transcript: LINC01586:5

Basic information

LNCipedia transcript ID: LINC01586:5 
LNCipedia gene ID: LINC01586
RefSeq ID: NR_120369
Location (hg38): chr15:88585571-88604603
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1835 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506090; TCONS_00023252; ENST00000506090.1; RP11-97O12.2-001; OTTHUMT00000415445.1; NONHSAT048179; NR_120369; NR_120369.1
Alternative gene names: ENSG00000249487; XLOC_011569; linc-DET1-1; AC013489.2; ENSG00000249487.2; RP11-97O12.2; OTTHUMG00000171852.1; TCONS_00023252; LINC01586


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.0123 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01586:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DET1-2:3
3.1 lnc-DET1-2:4
4.0 LINC01586:5
4.1 LINC01586:5
5.0 LINC01586:5
5.1 LINC01586:5
5.2 LINC01586:5