Transcript: LINC01578:3

Basic information

LNCipedia transcript ID: LINC01578:3 
HGNC Gene Symbol: LINC01578    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1578
Ensembl Gene ID: ENSG00000272888
Ensembl Transcript ID: ENST00000553829
Location (hg38): chr15:92882732-92883861
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 732 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT049671; ENST00000553829.1
Alternative gene names: ENSG00000272888.1; AC013394.2; ENSG00000272888.5; LINC01578; ; ENSG00000272888.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -20.1012 non-coding 
CPAT coding probability 6.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01578:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD2-6:2
4.0 LINC01578:3
4.1 LINC01578:3
5.0 LINC01578:3
5.1 LINC01578:3
5.2 LINC01578:3