Transcript: LINC01565:2

Basic information

LNCipedia transcript ID: LINC01565:2 
HGNC Gene Symbol: LINC01565    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1565
Ensembl Gene ID: ENSG00000198685
Ensembl Transcript ID: ENST00000613423
Location (hg38): chr3:128573280-128573729
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613423.1
Alternative gene names: ENSG00000198685.3; LINC01565; GR6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -414.2284 non-coding 
CPAT coding probability 50.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01565:2 no no no no

Available literature

  1. Pekarsky (1997), Activation of a novel gene in 3q21 and identification of intergenic fusion transcripts with ecotropic viral insertion site I in leukemia., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01565:2
4.1 LINC01565:2
5.0 LINC01565:2
5.1 LINC01565:2
5.2 LINC01565:2