Transcript: LINC01564:2

Basic information

LNCipedia transcript ID: LINC01564:2 
LNCipedia gene ID: LINC01564
Location (hg38): chr6:53628602-53631270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012509
Alternative gene names: XLOC_005327; linc-LRRC1-1; TCONS_00011314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.2172 non-coding 
CPAT coding probability 4.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01564:2 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC1-2:2
3.1 lnc-LRRC1-3:2
4.0 LINC01564:2
4.1 LINC01564:2
5.0 LINC01564:2
5.1 LINC01564:2
5.2 LINC01564:2