Transcript: LINC01554:15

Basic information

LNCipedia transcript ID: LINC01554:15 
LNCipedia gene ID: LINC01554
RefSeq ID: NR_026936
Location (hg38): chr5:95852232-95860133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1917 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026936.1
Alternative gene names: LINC01554


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.8064 non-coding 
CPAT coding probability 14.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01554:15 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01554:15
5.1 LINC01554:15
5.2 LINC01554:15