Transcript: LINC01550:5

Basic information

LNCipedia transcript ID: LINC01550:5 
LNCipedia gene ID: LINC01550
Location (hg38): chr14:97957930-97978124
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2314 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00022385
Alternative gene names: XLOC_011117; linc-ATG2B-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1158 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01550:5 no no no no

Available literature

  1. Yu (2015), Glucocorticoids Significantly Influence the Transcriptome of Bone Microvascular Endothelial Cells of Human Femoral Head., Chin. Med. J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-204N11.1.1-2:3
3.1 lnc-RP11-204N11.1.1-3:3
4.0 LINC01550:5
4.1 LINC01550:5
5.0 LINC01550:5
5.1 LINC01550:5
5.2 LINC01550:5