Transcript: LINC01539:22

Basic information

LNCipedia transcript ID: LINC01539:22 
LNCipedia gene ID: LINC01539
Location (hg38): chr18:56105106-56109837
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267712.1|ENST00000589447.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.8932 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:22 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01539:22
5.0 LINC01539:22
5.1 LINC01539:22
5.2 LINC01539:22