Transcript: LINC01539:11

Basic information

LNCipedia transcript ID: LINC01539:11 
HGNC Gene Symbol: LINC01539    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1539
Ensembl Gene ID: ENSG00000267712
Ensembl Transcript ID: ENST00000589293
Location (hg38): chr18:56095921-56137483
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059413; ENST00000589293.1; ENST00000589293.5
Alternative gene names: ENSG00000267712.1; RP11-456O19.4; ENSG00000267712.5; LINC01539;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.7396 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:11 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF4-5:11
4.0 LINC01539:11
4.1 LINC01539:11
5.0 LINC01539:11
5.1 LINC01539:11
5.2 LINC01539:11