Transcript: LINC01537:2

Basic information

LNCipedia transcript ID: LINC01537:2 
HGNC Gene Symbol: LINC01537    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1537
Ensembl Gene ID: ENSG00000227467
Ensembl Transcript ID: ENST00000450804
Location (hg38): chr11:72570660-72573229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2450 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450804; ENST00000450804.3; RP11-169D4.1-001; OTTHUMT00000397107.1; NONHSAT022776
Alternative gene names: ENSG00000227467; RP11-169D4.1; ENSG00000227467.3; OTTHUMG00000167927.1; LINC01537; RP11-169D4.1-001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.4193 non-coding 
CPAT coding probability 18.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01537:2 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG16L2-2:2
3.1 lnc-ATG16L2-6:1
4.0 LINC01537:2
4.1 LINC01537:2
5.0 LINC01537:2
5.1 LINC01537:2
5.2 LINC01537:2