Transcript: LINC01516:3

Basic information

LNCipedia transcript ID: LINC01516:3 
LNCipedia gene ID: LINC01516
RefSeq ID: NR_120649
Location (hg38): chr10:25113058-25161233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2977 bp
Exons: 8
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT011799; NR_120649; NR_120649.1
Alternative gene names: ; LINC01516


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.797 non-coding 
CPAT coding probability 17.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01516:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR158-1:3
4.0 LINC01516:3
4.1 LINC01516:3
5.0 LINC01516:3
5.1 LINC01516:3
5.2 LINC01516:3