Transcript: LINC01515:13

Basic information

LNCipedia transcript ID: LINC01515:13 
LNCipedia gene ID: LINC01515
Location (hg38): chr10:65585688-65681462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017835; ENST00000433152; ENST00000433152.1; RP11-222A11.1-001; OTTHUMT00000048275.1; NONHSAT013643
Alternative gene names: XLOC_008501; linc-LRRTM3-2; ENSG00000228065; RP11-222A11.1; ENSG00000228065.1; OTTHUMG00000018330.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.9105 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01515:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRTM3-1:3
3.1 lnc-LRRTM3-1:3
4.0 LINC01515:13
4.1 LINC01515:13
5.0 LINC01515:13
5.1 LINC01515:13
5.2 LINC01515:13