Transcript: LINC01490:3

Basic information

LNCipedia transcript ID: LINC01490:3 
HGNC Gene Symbol: LINC01490    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1490
Ensembl Gene ID: ENSG00000257741
Ensembl Transcript ID: ENST00000551399
RefSeq ID: NR_120470
Location (hg38): chr12:80763154-80770717
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1260 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000551399; ENST00000551399.1; RP11-540D4.3-001; OTTHUMT00000407759.1; NONHSAT029679; NR_120470.1
Alternative gene names: ENSG00000257741; RP11-540D4.3; ENSG00000257741.1; OTTHUMG00000170167.1; ENSG00000257741.5; LINC01490;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.0304 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01490:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYF5-1:3
3.1 lnc-MYF5-1:2
4.0 LINC01490:3
4.1 LINC01490:3
5.0 LINC01490:3
5.1 LINC01490:3
5.2 LINC01490:3