Transcript: LINC01478:1

Basic information

LNCipedia transcript ID: LINC01478:1 
HGNC Gene Symbol: LINC01478    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1478
Ensembl Gene ID: ENSG00000267337
Ensembl Transcript ID: ENST00000587877
Location (hg38): chr18:44323436-44531697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2068 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511428; ENST00000587877.1
Alternative gene names: ENSG00000250872; ENSG00000267337.1; CTC-782O7.1; LINC01478;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.0232 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01478:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT4-2:1
3.1 lnc-SYT4-2:1
4.0 LINC01478:1
4.1 LINC01478:1
5.0 LINC01478:1
5.1 LINC01478:1
5.2 LINC01478:1