Transcript: LINC01475:1

Basic information

LNCipedia transcript ID: LINC01475:1 
HGNC Gene Symbol: LINC01475    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1475
Ensembl Gene ID: ENSG00000257582
Ensembl Transcript ID: ENST00000548010
RefSeq ID: NR_120618
Location (hg38): chr10:99526350-99531177
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 766 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017748; ENST00000548010.1; RP11-129J12.2-001; OTTHUMT00000409553.1; NONHSAT015920; NR_120618; NR_120618.1
Alternative gene names: XLOC_008918; linc-GOT1; ENSG00000257582.1; RP11-129J12.2; OTTHUMG00000170536.1; ENSG00000257582.5; LINC01475;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.1076 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01475:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A28-1:1
3.1 lnc-SLC25A28-2:1
4.0 LINC01475:1
4.1 LINC01475:1
5.0 LINC01475:1
5.1 LINC01475:1
5.2 LINC01475:1