Transcript: LINC01473:2

Basic information

LNCipedia transcript ID: LINC01473:2 
LNCipedia gene ID: LINC01473
Location (hg38): chr2:186032896-186456853
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8245 bp
Exons: 18
Sources: NONCODE v4
Alternative transcript names: NONHSAT075981
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0045 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01473:2 no no no no

Available literature

  1. Brueckner (2012), Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSWIM2-3:5
4.0 LINC01473:2
4.1 LINC01473:2
5.0 LINC01473:2
5.1 LINC01473:2
5.2 LINC01473:2