Transcript: LINC01441:1

Basic information

LNCipedia transcript ID: LINC01441:1 
HGNC Gene Symbol: LINC01441    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1441
Ensembl Gene ID: ENSG00000224008
Ensembl Transcript ID: ENST00000433766
RefSeq ID: NR_110064
Location (hg38): chr20:55420336-55427197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2290 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028069; ENST00000433766; ENST00000433766.1; RP5-1010E17.2-001; OTTHUMT00000259284.1; NONHSAT080425; NR_110064; NR_110064.1
Alternative gene names: XLOC_013804; linc-CYP24A1-2; ENSG00000224008; RP5-1010E17.2; ENSG00000224008.1; OTTHUMG00000134311.1; LINC01441;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.9542 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01441:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBLN4-4:1
3.1 lnc-CBLN4-4:1
4.0 LINC01441:1
4.1 LINC01441:1
5.0 LINC01441:1
5.1 LINC01441:1
5.2 LINC01441:1