Transcript: LINC01435:5

Basic information

LNCipedia transcript ID: LINC01435:5 
HGNC Gene Symbol: LINC01435    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1435
Ensembl Gene ID: ENSG00000229981
Ensembl Transcript ID: ENST00000425050
Location (hg38): chr10:107871576-108069294
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 722 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018040; ENST00000425050; ENST00000425050.1; RP11-215N21.1-001; OTTHUMT00000050240.1; NONHSAT016292; ENST00000425050.5
Alternative gene names: XLOC_008943; linc-SORCS1-3; ENSG00000229981; RP11-215N21.1; ENSG00000229981.1; OTTHUMG00000019020.1; ENSG00000229981.3; ENSG00000229981.7; LINC01435; TCONS_00018040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.2632 non-coding 
CPAT coding probability 10.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01435:5 no no no no

Available literature

  1. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS1-3:1
3.1 lnc-SORCS1-3:1
4.0 LINC01435:5
4.1 LINC01435:5
5.0 LINC01435:5
5.1 LINC01435:5
5.2 LINC01435:5