Transcript: LINC01433:2

Basic information

LNCipedia transcript ID: LINC01433:2 
LNCipedia gene ID: LINC01433
Location (hg38): chr20:4193067-4195728
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000419003.1; RP4-779E11.3-001; OTTHUMT00000077801.1
Alternative gene names: ENSG00000230176.1; RP4-779E11.3; OTTHUMG00000031776.1; LOC728228


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.4411 non-coding 
CPAT coding probability 4.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01433:2 no no no no

Available literature

  1. Qian (2018), Long non-coding RNA linc01433 promotes migration and invasion in non-small cell lung cancer., Thorac Cancer
  2. Hu (2015), Functional role and mechanism of lncRNA LOC728228 in malignant 16HBE cells transformed by anti-benzopyrene-trans-7,8-dihydrodiol-9,10-epoxide., Mol. Carcinog.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMOX-1:1
4.0 LINC01433:2
4.1 LINC01433:2
5.0 LINC01433:2
5.1 LINC01433:2
5.2 LINC01433:2