Transcript: LINC01433:1

Basic information

LNCipedia transcript ID: LINC01433:1 
HGNC Gene Symbol: LINC01433    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1433
Ensembl Gene ID: ENSG00000230176
Ensembl Transcript ID: ENST00000419003
Location (hg38): chr20:4193065-4195943
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078273; ENST00000419003.2
Alternative gene names: ENSG00000230176.2; RP4-779E11.3; LINC01433; LOC728228


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.4411 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01433:1 no no no no

Available literature

  1. Qian (2018), Long non-coding RNA linc01433 promotes migration and invasion in non-small cell lung cancer., Thorac Cancer
  2. Hu (2015), Functional role and mechanism of lncRNA LOC728228 in malignant 16HBE cells transformed by anti-benzopyrene-trans-7,8-dihydrodiol-9,10-epoxide., Mol. Carcinog.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMOX-1:3
4.0 LINC01433:1
4.1 LINC01433:1
5.0 LINC01433:1
5.1 LINC01433:1
5.2 LINC01433:1