Transcript: LINC01428:4

Basic information

LNCipedia transcript ID: LINC01428:4 
HGNC Gene Symbol: LINC01428    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1428
Ensembl Gene ID: ENSG00000228888
Ensembl Transcript ID: ENST00000449581
RefSeq ID: NR_110609
Location (hg38): chr20:7146467-7254202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 874 bp
Exons: 8
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027998; ENST00000449581; ENST00000449581.1; RP4-764O22.2-001; OTTHUMT00000077921.1; NONHSAT078537; NR_110609; NR_110609.1
Alternative gene names: XLOC_013647; linc-FERMT1-3; ENSG00000228888; RP4-764O22.2; ENSG00000228888.1; OTTHUMG00000031836.1; LINC01428;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.5463 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01428:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAO1-1:3
3.1 lnc-HAO1-2:3
4.0 LINC01428:4
4.1 LINC01428:4
5.0 LINC01428:4
5.1 LINC01428:4
5.2 LINC01428:4