Transcript: LINC01428:3

Basic information

LNCipedia transcript ID: LINC01428:3 
LNCipedia gene ID: LINC01428
Ensembl Gene ID: ENSG00000238102
Ensembl Transcript ID: ENST00000428954
Location (hg38): chr20:7256580-7258214
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027999; ENST00000428954; ENST00000428954.1; RP11-19D2.1-001; OTTHUMT00000077922.1; NONHSAT078540
Alternative gene names: XLOC_013647; linc-FERMT1-3; ENSG00000238102; RP11-19D2.1; ENSG00000238102.1; OTTHUMG00000031837.1; ; AL080248.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.3961 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01428:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAO1-1:2
3.1 lnc-HAO1-2:2
4.0 LINC01428:3
4.1 LINC01428:3
5.0 LINC01428:3
5.1 LINC01428:3
5.2 LINC01428:3