Transcript: LINC01426:5

Basic information

LNCipedia transcript ID: LINC01426:5 
LNCipedia gene ID: LINC01426
Location (hg38): chr21:34745847-34784869
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2525 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00028769
Alternative gene names: XLOC_013928; linc-CBR1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9862 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01426:5 no no no no

Available literature

  1. Morton (2014), Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens., Lung Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLIC6-2:2
3.1 lnc-CLIC6-2:3
4.0 LINC01426:5
4.1 LINC01426:5
5.0 LINC01426:5
5.1 LINC01426:5
5.2 LINC01426:5