Transcript: LINC01425:2

Basic information

LNCipedia transcript ID: LINC01425:2 
HGNC Gene Symbol: LINC01425    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1425
Ensembl Gene ID: ENSG00000233997
Ensembl Transcript ID: ENST00000425979
Location (hg38): chr21:21746973-21797415
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028805; ENST00000425979; ENST00000425979.1; AP000475.2-002; OTTHUMT00000170923.1; NONHSAT081384; ENST00000425979.5
Alternative gene names: XLOC_013878; linc-JAM2-12; ENSG00000233997; AP000475.2; ENSG00000233997.1; OTTHUMG00000078125.1; ENSG00000233997.5; LINC01425;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.4793 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01425:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCAM2-2:1
3.1 lnc-NCAM2-2:1
4.0 LINC01425:2
4.1 LINC01425:2
5.0 LINC01425:2
5.1 LINC01425:2
5.2 LINC01425:2