Transcript: LINC01419:3

Basic information

LNCipedia transcript ID: LINC01419:3 
LNCipedia gene ID: LINC01419
Location (hg38): chr8:83403758-83408895
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1516 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014497
Alternative gene names: XLOC_006863; linc-RALYL-1; TCONS_00014497


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.1986 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 1 coding 
seqAAMSCNTHREDLQLHSRASETTNPPEGRNSEHI
covF1Prop0.172413793
orfFrame6.660819418

In stringent set: no

Locus conservation

Locus conservation?
LINC01419:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALYL-2:1
3.1 lnc-RALYL-2:2
4.0 LINC01419:3
4.1 LINC01419:3
5.0 LINC01419:3
5.1 LINC01419:3
5.2 LINC01419:3