Transcript: LINC01410:2

Basic information

LNCipedia transcript ID: LINC01410:2 
HGNC Gene Symbol: LINC01410    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1410
Ensembl Gene ID: ENSG00000238113
Ensembl Transcript ID: ENST00000424345
RefSeq ID: NR_121647
Location (hg38): chr9:62801465-62813486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2877 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000424345; ENST00000424345.1; RP11-262H14.1-001; OTTHUMT00000128851.1; NONHSAT131524; NR_121647; ENST00000424345.5; NR_121647.1
Alternative gene names: ENSG00000238113; RP11-262H14.1; ENSG00000238113.1; OTTHUMG00000013291.2; ENSG00000238113.2; ENSG00000238113.6; LINC01410;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3744 non-coding 
CPAT coding probability 10.97% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.15625
seqAAMFSWMVLMLVDVLQCLDIKILGMQHHMRSLKNKI
orfFrame6.209453366

In stringent set: no

Locus conservation

Locus conservation?
LINC01410:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-262H14.4.1-1:2
3.1 lnc-RP11-262H14.4.1-1:2
4.0 LINC01410:2
4.1 LINC01410:2
5.0 LINC01410:2
5.1 LINC01410:2
5.2 LINC01410:2