Transcript: LINC01405:9

Basic information

LNCipedia transcript ID: LINC01405:9 
LNCipedia gene ID: LINC01405
Location (hg38): chr12:110938350-110943430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 270 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00021213
Alternative gene names: XLOC_009879; linc-CUX2-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.9279 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01405:9 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC63-2:7
3.1 lnc-CCDC63-2:7
4.0 LINC01405:9
4.1 LINC01405:9
5.0 LINC01405:9
5.1 LINC01405:9
5.2 LINC01405:9