Transcript: LINC01405:16

Basic information

LNCipedia transcript ID: LINC01405:16 
LNCipedia gene ID: LINC01405
Location (hg38): chr12:110936585-110958208
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000185847.3|ENST00000553177.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.3353 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01405:16 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01405:16
5.0 LINC01405:16
5.1 LINC01405:16
5.2 LINC01405:16