Transcript: LINC01397:5

Basic information

LNCipedia transcript ID: LINC01397:5 
LNCipedia gene ID: LINC01397
Location (hg38): chr1:110083558-110085175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 377 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001094; NONHSAT005096
Alternative gene names: XLOC_000340; linc-UBL4B;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.3173 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01397:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBL4B-1:4
3.1 lnc-UBL4B-1:5
4.0 LINC01397:5
4.1 LINC01397:5
5.0 LINC01397:5
5.1 LINC01397:5
5.2 LINC01397:5