Transcript: LINC01397:3

Basic information

LNCipedia transcript ID: LINC01397:3 
HGNC Gene Symbol: LINC01397    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1397
Ensembl Gene ID: ENSG00000258673
Ensembl Transcript ID: ENST00000554808
RefSeq ID: NR_126382
Location (hg38): chr1:110082688-110109719
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000554808.1; RP4-773N10.6-001; OTTHUMT00000409810.1; NONHSAT005095; NR_126382; NR_126382.1
Alternative gene names: ENSG00000258673.1; RP4-773N10.6; OTTHUMG00000170609.1; LINC01397;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.1663 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01397:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBL4B-1:3
4.0 LINC01397:3
4.1 LINC01397:3
5.0 LINC01397:3
5.1 LINC01397:3
5.2 LINC01397:3