Transcript: LINC01397:2

Basic information

LNCipedia transcript ID: LINC01397:2 
LNCipedia gene ID: LINC01397
Location (hg38): chr1:110082648-110085201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002116; NONHSAT005094
Alternative gene names: XLOC_000340; linc-UBL4B;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.824 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01397:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBL4B-1:2
3.1 lnc-UBL4B-1:2
4.0 LINC01397:2
4.1 LINC01397:2
5.0 LINC01397:2
5.1 LINC01397:2
5.2 LINC01397:2