Transcript: LINC01393:3

Basic information

LNCipedia transcript ID: LINC01393:3 
HGNC Gene Symbol: LINC01393    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1393
Ensembl Gene ID: ENSG00000225535
Ensembl Transcript ID: ENST00000467677
Location (hg38): chr7:115079019-115125943
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000467677; ENST00000467677.1; AC068610.3-004; OTTHUMT00000351027.1; NONHSAT122843
Alternative gene names: ENSG00000225535; AC068610.3; ENSG00000225535.2; OTTHUMG00000065346.3; ENSG00000225535.6; LINC01393;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.8614 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01393:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MDFIC-1:3
3.1 lnc-MDFIC-1:3
4.0 LINC01393:3
4.1 LINC01393:3
5.0 LINC01393:3
5.1 LINC01393:3
5.2 LINC01393:3