Transcript: LINC01388:12

Basic information

LNCipedia transcript ID: LINC01388:12 
LNCipedia gene ID: LINC01388
Ensembl Gene ID: ENSG00000227917
Ensembl Transcript ID: ENST00000427318
Location (hg38): chr9:100994-102941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427318.2
Alternative gene names: ENSG00000227917.2; RP11-143M1.3; TCONS_l2_00029888; AL449043.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -62.3837 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:12 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXD4-2:6
4.1 LINC01388:12
5.0 LINC01388:12
5.1 LINC01388:12
5.2 LINC01388:12