Transcript: LINC01384:3

Basic information

LNCipedia transcript ID: LINC01384:3 
LNCipedia gene ID: LINC01384
Location (hg38): chr20:22589176-22607862
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 753 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028338; NONHSAT079000
Alternative gene names: XLOC_013685; linc-FOXA2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.0599 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01384:3 no no no no

Available literature

  1. Liang (2018), LncRNA-NEF antagonized epithelial to mesenchymal transition and cancer metastasis via cis-regulating FOXA2 and inactivating Wnt/β-catenin signaling., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-2:3
3.1 lnc-FOXA2-1:3
4.0 LINC01384:3
4.1 LINC01384:3
5.0 LINC01384:3
5.1 LINC01384:3
5.2 LINC01384:3