Transcript: LINC01378:2

Basic information

LNCipedia transcript ID: LINC01378:2 
LNCipedia gene ID: LINC01378
Location (hg38): chr4:117428396-117691025
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2353 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000422145; ENST00000422145.2; AC092661.1-002; OTTHUMT00000291362.2
Alternative gene names: ENSG00000236922; AC092661.1; ENSG00000236922.2; OTTHUMG00000059450.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5938 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01378:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDST3-4:1
3.1 lnc-NDST3-4:1
4.0 LINC01378:2
4.1 LINC01378:2
5.0 LINC01378:2
5.1 LINC01378:2
5.2 LINC01378:2