Transcript: LINC01345:6

Basic information

LNCipedia transcript ID: LINC01345:6 
HGNC Gene Symbol: LINC01345    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1345
Ensembl Gene ID: ENSG00000226374
Ensembl Transcript ID: ENST00000425194
Location (hg38): chr1:3947149-3948980
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 937 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000462; ENST00000425194; ENST00000425194.1; RP13-614K11.2-001; OTTHUMT00000001812.1; NONHSAT000566
Alternative gene names: XLOC_000684; linc-C1orf174-2; ENSG00000226374; RP13-614K11.2; ENSG00000226374.1; OTTHUMG00000000731.1; ENSG00000226374.2; LINC01345


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3124 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01345:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf174-1:1
3.1 lnc-C1orf174-1:1
4.0 lnc-C1orf174-1:1
4.1 lnc-C1orf174-1:1
5.0 lnc-C1orf174-1:1
5.1 LINC01345:2
5.2 LINC01345:6