Transcript: LINC01327:1

Basic information

LNCipedia transcript ID: LINC01327:1 
HGNC Gene Symbol: LINC01327    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1327
Ensembl Gene ID: ENSG00000241669
Ensembl Transcript ID: ENST00000498413
RefSeq ID: NR_126353
Location (hg38): chr3:167392796-167408519
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005644; ENST00000498413; ENST00000498413.1; RP11-576M8.2-001; OTTHUMT00000350572.1; NONHSAT093097; NR_126353; NR_126353.1
Alternative gene names: XLOC_002904; linc-SERPINI1-1; ENSG00000241669; RP11-576M8.2; ENSG00000241669.1; OTTHUMG00000158284.1; LINC01327; TCONS_00005644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.2312 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01327:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINI1-5:1
3.1 lnc-SERPINI1-5:1
4.0 LINC01327:1
4.1 LINC01327:1
5.0 LINC01327:1
5.1 LINC01327:1
5.2 LINC01327:1